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SRX24679948: SN treated root in Col-0
1 ILLUMINA (Illumina HiSeq 2500) run: 13.8M spots, 4.2G bases, 1.2Gb downloads

Design: Arabidopsis thaliana (Col-0) seeds were sterilized and grown as described (Fridman et 508 al., 2014; Devi et al., 2022). After dark incubation at 4C for 2 days, plates were placed 509 vertically in a growth chamber (16 h light/8 h dark cycle, light intensity of 120- molphotonsm2 s 1 510 ). Three days post-germinated (3-dpg), seedlings were transferred 511 to modified MS medium, SN containing 10 mM KNO3 (HiMedia, #PCT0010) + 1mM 512 (NH4)2SO4 (Sigma-Aldrich, #A3920) + 55 M FeSO4 (Duchefa, #FG512) or FeCl3 (HiMedia), SN with low Fe, (SN-Fe) (FeSO4 omitted from SN medium), N as a sole NH4 + 513 source, (0 mM KNO3 + 1mM (NH4)2SO4 + 55 M FeSO4) and NH4 + with low Fe, (NH4 + 514 - Fe) (FeSO4 omitted from NH4 + 515 medium) with 0.2% sucrose (Sigma-Aldrich, #S0389)
Submitted by: National Institute of Plant Genome Researcg
Study: Iron availability regulates ammonium toxicity by modulating Jasmonate biosynthesis and signaling
show Abstracthide Abstract
Plants adapt to changing environmental conditions by adjusting their growth physiology. Nitrate (NO3-), and ammonium (NH4+) are the major inorganic nitrogen forms for plant uptake. However, high NH4+ inhibits plant growth and roots undergo striking changes such as inhibition of cell expansion and division thus, leading to reduced root elongation. In this work, we show that high NH4+ modulate nitrogen metabolism and root developmental physiology by inhibiting iron (Fe) dependent Jasmonate (JA) signaling and response in Arabidopsis thaliana. Transcriptomic data suggests that NH4+ availability regulates Fe and JA-responsive genes. High NH4+ levels lead to enhanced root Fe accumulation which in turn impairs nitrogen balance and growth by suppressing JA biosynthesis and signaling response. By integrating pharmacological, physiological, and genetic experiments, the study elucidates the involvement of NH4+ and Fe-derived responses in regulating root growth and nitrogen metabolism through modulation of the JA pathway during NH4+ stress. The JA signaling transcription factor, MYC2 directly binds with the promoter of the nitrate transporter gene, NRT1.1, and represses it to optimize NH4+/Fe-JA balance for plant adaptation during NH4+ stress.
Sample:
SAMN41517639 • SRS21414539 • All experiments • All runs
Library:
Name: SA2_1
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: PAIRED
Runs: 1 run, 13.8M spots, 4.2G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR2915883613,849,1494.2G1.2Gb2024-05-24

ID:
32998922

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